21. Bioinformatics Research Center Home The bioinformatics Research Center (BRC) at North Carolina State University is one of the world s premier centers for education and research in http://statgen.ncsu.edu/

22. ONLamp.com -- Beginning Python For Bioinformatics An introduction to processing biological information with the Python language. http://www.onlamp.com/pub/a/python/2002/10/17/biopython.html

Sign In/My Account View Cart Articles Weblogs ... MySQL Conference and Expo April 14-17, 2008, Santa Clara, CA Listen Print Discuss Subscribe to Python ... Subscribe to Newsletters Beginning Python for Bioinformatics by Patrick O'Brien Bioinformatics, the use of computers in biological research, is the newest wrinkle on one of the oldest pursuitstrying to uncover the secret of life. While we may not know all of life's secrets, at the very least computers are helping us understand many of the biological processes that take place inside of living things. In fact, the use of computers in biological research has risen to such a degree that computer programming has now become an important and almost essential skill for today's biologists. The purpose of this article is to introduce Python as a useful and viable development language for the computer programming needs of the bioinformatics community. In this introduction, we'll identify some of the advantages of using Python for bioinformatics. Then we'll create and demonstrate examples of working code to get you started. In subsequent articles we'll explore some significant bioinformatics projects that make use of Python. A Bit of Background Because scientists have long relied on the open availability of each other's research results, it was only natural that they would turn to Open Source software when it came time to apply computer processes to the study of biological processes. One of the first Open Source languages to gain popularity among biologists was Perl. Perl gained a foothold in bioinformatics based on its strong text processing facilities, which were ideally suited to analyzing early sequence data. To its credit, Perl has a history of successful use in bioinformatics and is still a very useful tool for biological research.

23. The Brutlag Bioinformatics Group Homepage of a group at Stanford University who are interested in the problems of predicting biological function and structure from primary sequence. http://motif.stanford.edu/

24. Science Features bioinformatics books, resources, news and articles. http://www.oreilly.com/pub/topic/science

My Account View Cart Home Network ... Order Info Science Publication Date Upcoming Bestselling Alphabetical ... Visualizing Data By  Ben Fry December 2007 $39.99 USD Read more. Illustrated Guide to Astronomical Wonders By  Robert Bruce Thompson Barbara Fritchman Thompson October 2007 $29.99 USD Read more. Mind Performance Hacks By  Ron Hale-Evans February 2006 $24.99 USD Read more. Excel Scientific and Engineering Cookbook By  David M. Bourg January 2006 $44.99 USD Read more. Astronomy Hacks By  Robert Bruce Thompson Barbara Fritchman Thompson June 2005 $24.95 USD Read more. Mind Hacks By  Tom Stafford Matt Webb November 2004 $24.95 USD Read more. Mastering Perl for Bioinformatics By  James Tisdall September 2003 $39.95 USD Read more. BLAST By  Ian Korf Mark Yandell Joseph Bedell July 2003 $39.95 USD Read more. Sequence Analysis in a Nutshell: A Guide to Tools By  Scott Markel January 2003 $29.95 USD Read more. Physics for Game Developers By  David M. Bourg November 2001 $39.95 USD

25. Bioinformatics Program www.bioinformatics.utep.edu. bioinformatics Program at The University of Texas at El Paso bioinformatics@utep.edu. Terms of Use Privacy Statement. http://www.bioinformatics.utep.edu/

Home Contact Us Faculty Resources ... Upcoming Bioinformatics Colloquium Welcome to Bioinformatics Program Printable Brochure (3MB PDF) Your browser does not support inline frames or is currently configured not to display inline frames. Bioinformatics Program Vision and Mission Program Committees Faculty Homepages Research Programs ... Information Request Form Other Resources College of Science Registrar Admissions Graduate School ... Bioinformatics Research Poster Session Bioinformatics Program at The University of Texas at El Paso - bioinformatics@utep.edu Privacy Statement

26. Oxford Journals | Life Sciences&Mathematics & Physical Sciences | Briefings In B Briefings in bioinformatics received an impact factor of 24.370 in the 2006 ISI Briefings in bioinformatics is a superb journal, and I find it to be an http://bib.oxfordjournals.org/

@import "/resource/css/main.css"; @import "/resource/css/homepage.css"; @import "/resource/css/journal.css"; @import "/resource/css/bib.css"; @import "/resource/css/progress.css"; Skip Navigation Oxford Journals Contact Us My Basket ... My Account Briefings in Bioinformatics About This Journal Contact This Journal Subscriptions Current Issue ... Life Sciences Briefings in Bioinformatics Read This Journal View Current Issue (Volume 9 Issue 2 March 2008) Advance Access Browse the Archive Briefings in Bioinformatics received an impact factor of in the 2006 ISI Journal Citation Reports, achieving a rank of in Biochemical Research. Click here for more information and free access to the highly-cited MEGA3 article. Briefings in Bioinformatics is an international forum for researchers and educators in the life sciences. The journal publishes reviews for the users of databases and analytical tools of contemporary genetics and molecular biology and is unique in providing practical help and guidance to the non-specialist. Briefings in Bioinformatics is a superb journal, and I find it to be an essential resource for staying current with the field of bioinformatics. The field of bioinformatics evolves at a rapid pace, and this journal rigorously describes current progress and often anticipates likely future developments. From a practical point of view, I use information from these articles in the laboratory and I also reference the journal in my teaching and publications."

27. BioInformatics Services: Homepage bioinformatics Services (BIS) is a biotechnology consulting firm specializing in applying the power of computational biology to build solutions to complex http://www.bioinformaticsservices.com/

Bioinformatics Services Computational Tools for Biological Complexity BioInformatics Services (BIS) is a biotechnology consulting firm specializing in applying the power of computational biology to build solutions to complex biological and data analysis problems faced by scientists in public and private research institutes, biotechnology companies, and universities. BIS is operated by Robert D. Phair, Ph.D. Contact Information: E-mail: info@bioinformaticsservices.com Phone: Cell: Web (This site): http://www.bioinformaticsservices.com There are two main areas of this Website. Select one of these links for fast access to what interests you: Modeling Services, Computational Biology Services and Integrative Bioinformatics Services to Help You Deal Effectively with Biological Complexity Free Resources for Modelers and Computational Biologists What's New - We cordially invite you to attend KinMet2008, an unofficial satellite meeting of the AHA/ATVB meeting. This year we are meeting on April 15 at the Omni Hotel in Atlanta. All investigators interested in kinetic analysis of lipid, lipoprotein and sterol metabolism are welcome. Details and current schedule of talks are on the

28. UCSC Genome Browser Home Provides genome browser, gene sorter, blat search function, and publications. http://genome.ucsc.edu/

Genomes Blat Tables Gene Sorter ... Contact Us About the UCSC Genome Bioinformatics Site Welcome to the UCSC Genome Browser website. This site contains the reference sequence and working draft assemblies for a large collection of genomes. It also provides a portal to the ENCODE project. We encourage you to explore these sequences with our tools. The Genome Browser zooms and scrolls over chromosomes, showing the work of annotators worldwide. The Gene Sorter shows expression, homology and other information on groups of genes that can be related in many ways. Blat quickly maps your sequence to the genome. The Table Browser provides convenient access to the underlying database. VisiGene lets you browse through a large collection of in situ mouse and frog images to examine expression patterns. Genome Graphs allows you to upload and display genome-wide data sets.

29. Browsing Bioinformatics : Nature Precedings Date Received 04 March 2008 1318 UTC; Posted 04 March 2008; Document Type Poster / Presentation; Subjects bioinformatics; Tags http://precedings.nature.com/subjects/bioinformatics

Jump to main content Jump to navigation Log in Register ... Advanced search Search: All documents Manuscripts Posters / Presentations Bioinformatics documents (104 entries in total) get web feed Search within Bioinformatics: 0 votes The genetic equidistance result of molecular evolution is independent of mutation rates Shi Huang Date: Received 27 March 2008 20:23 UTC; Posted 28 March 2008 Document Type: Manuscript (Preprint) Subjects: Evolution and Ecology Genetics Bioinformatics Tags: genetic equidistance result molecular clock mutation rate Evolution ... PDF 1 vote Identifying Data Sharing in Biomedical Literature Heather Piwowar Date: Received 25 March 2008 16:22 UTC; Posted 25 March 2008 Document Type: Manuscript (Preprint) Subjects: Bioinformatics Tags: natural language processing data sharing bioinformatics microarrays ... PDF 3 votes Minimum Information about a Neuroscience Investigation (MINI) Electrophysiology Frank Gibson Date: Received 25 March 2008 15:31 UTC; Posted 25 March 2008 Document Type: Manuscript (Preprint) Subjects: Neuroscience Bioinformatics Tags: reproducibility data sharing mini standards ... PDF 2 votes A review of journal policies for sharing research data Heather A. Piwowar

30. CSREES Funding Opportunity Animal Genome: Bioinformatics, NRI The bioinformatics program requests applications for the development of bioinformatic tools that will assist in functional genomics, annotation and http://www.csrees.usda.gov/fo/animalgenomebioinformaticsnri.cfm

Information for ... Consumers CSREES Grantees Government Grant Applicants Media Small Businesses Youth and Educators You are here: Home Funding Opportunities / National Research Initiative - Animal Genome (C): Bioinformatics National Research Initiative - Animal Genome (C): Bioinformatics The Animal Genome program provides science-based knowledge and technologies to generate new or improved high-quality products/processes and to promote the efficiency of agricultural production systems. This information will also enhance protection and safety of the Nation's agriculture and food supply through development and delivery of information/technologies to genetically improve animals of agricultural importance. The Bioinformatics program requests applications for the development of bioinformatic tools that will assist in functional genomics, annotation and comparative genomics, in silico analysis, and use of genomic data in genetic improvement programs of agriculturally important animals. Applicants are strongly encouraged to read the entire Program Description section for current priorities and additional information relative to the program of interest. Please carefully review the RFA guidelines to ensure application acceptance. Special Notation More NRI Information Who Is Eligible to Apply 1862 Land-Grant Institutions 1890 Land-Grant Institutions 1994 Land-Grant Institutions City or Township Governments County Governments For-profit Organizations Other Than Small Businesses Hispanic-Serving Institutions

31. UCSD Bioinformatics Program Copyright©2001 Regents of the University of California. All rights reserved. Last modified Thursday, November 17, 2005. http://bioinformatics.ucsd.edu/

Home Graduate Program For Students Participating Departments ... Site Map Last modified Thursday, November 17, 2005

32. Main Page - Open Bioinformatics Foundation The Open bioinformatics Foundation or O B F is a non profit, volunteer run organization focused on supporting open source programming in bioinformatics. http://www.open-bio.org/

Main Page From Open Bioinformatics Foundation Jump to: navigation search About Us open source programming in bioinformatics The foundation grew out of the volunteer projects BioPerl BioJava and BioPython Our main activities are: Underwriting and supporting the BOSC conferences Organizing and supporting developer-centric "hackathon" events We are incorporated in the state of Delaware, USA as a not-for-profit company. BOSC Bioinformatics Open Source Conference (BOSC) is held annually in conjunction with ISCB's meeting ISMB. BOSC 2008 will be held in conjunction with ISMB 2008 in Toronto, Ontario, Canada See some of the Past BOSC conferences Retrieved from " http://www.open-bio.org/wiki/Main_Page Views Article Discussion View source History Personal tools Log in / create account Navigation Main Page Projects Newsletters News ... Donations Search Toolbox What links here Related changes Upload file Special pages ... Permanent link This page was last modified 21:59, 4 March 2008. This page has been accessed 83,693 times. Content is available under GNU Free Documentation License 1.2

33. UCLA Bioinformatics Main web site for the UCLA bioinformatics program. http://www.bioinformatics.ucla.edu/

UCLA Bioinformatics Previous version of UCLA Bioinformatics is available at http://bioinfo.mbi.ucla.edu The LinkOuts Official Web Sites Bioinfo Plone Site: Previous Version of UCLA Bioinformatics Groups: Bioinformatics IDP IGERT: NSF-IGERT Bioinformatics Training Grant Courses: Bioinformatics Courses at UCLA ... Forum: Discussion Forum for UCLA Bioinformatics The Latest News Site News Previous Version of UCLA Bioinformatics Updated Blogs Thinking About Bioinformatics UCLA Bioinformatics This is a WordPress Mu powered site. You can: Login Create a new blog UCLA Bioinformatics is proudly powered by WordPress MU running on Bioinformatics.ucla.edu Create a new blog and join in the fun! Entries (RSS) and Comments (RSS)

34. UNC Bioinformatics And Computational Biology Training Program (BCB) bioinformatics and Computational Biology PhD Program awarded! On November 8, 2007 The UNC Board of Governors voted unanimously to approve BCB as a PhD http://bcb.unc.edu/

Bioinformatics and Computational Biology PhD Program awarded! On November 8, 2007 The UNC Board of Governors voted unanimously to approve BCB as a PhD granting curriculum. Applications are currently being accepted through the Biological and Biomedical Sciences Program for all students interested in entering for Fall 2008! All interested students are strongly encouraged to apply, complete application instructions can be found from the BBSP website or the Application tab of this website. Bioinformatics and Computational Biology Training Program at UNC-Chapel Hill site updated 30 November, 2007

35. O'Reilly Bioinformatics Conference 2003 An Interview with Lincoln Stein In this interview, Lincoln Stein talks about the bioinformatics technologies and tools he s most excited about. http://conferences.oreillynet.com/bio2003/

Home Registration Speakers Keynotes ... Jim Kent Researcher, UC Santa Cruz , 2003 Ben Franklin Award recipient Lincoln Stein Researcher, Cold Spring Harbor Lab Steven Brenner Assistant Professor and leader of a computational genomics research group at the University of California, Berkeley Francis Ouellette Director, University of British Columbia Bioinformatics Centre Alvis Brazma Microarray Informatics Group Leader, European Bioinformatics Institute James Gosling Co-inventor of Java; VP and Fellow, Sun Microsystems Stephen Wolfram Creator of Mathematica , author of A New Kind of Science Damian Conway Research Fellow, Monash University Feel Left Out? If you missed this year's Conference, but want to find out what was covered, download the presentation files Want to view BioCon conference sessions and events in iCal on Mac OS X? Here's how An Interview with Lincoln Stein In this interview, Lincoln Stein talks about the bioinformatics technologies and tools he's most excited about. Lincoln will deliver a keynote on Bioinformatics: Gone in 2012 Stephen Wolfram on Bioinformatics Biocon keynote speaker and A New Kind of Science author Stephen Wolfram chatted recently with Tim O'Reilly about his research, his new book, and its connection to bioinformatics. Don't miss Stephen's keynote on A New Kind of Science and Foundations For Theory in Biology An Interview with Jim Kent Benjamin Franklin Award recipient Jim Kent talks about the future of genomics, modeling biological processes, and open source bioinformatics in this interview on bio.oreilly.com. Kent will accept the annual Bioinformatics.Org award in a plenary session.

36. SourceForge.net: Software Map sourceforge.net/softwaremap/trove_list.php?form_cat=252 Similar pages Proteins Structure, Function, and bioinformaticsPublishes original reports of significant experimental and analytic research in protein structure, function, computation, genetics and design. http://sourceforge.net/softwaremap/trove_list.php?form_cat=252

37. Welcome To Bioinformatics At RIT bioinformatics is a field that has been developing over the last 20 years. It is a discipline that represents a marriage between biotechnology and computer http://www.bioinformatics.rit.edu/

US Mail: Bioinformatics Department of Biological Sciences Rochester Institute of Technology 85 Lomb Memorial Drive Rochester, New York 14623 E-mail: Dr. Gary R. Skuse, Director Telephone: Fax: What is Bioinformatics? Bioinformatics is a field that has been developing over the last 20 years. It is a discipline that represents a marriage between biotechnology and computer technologies and has evolved through the convergence of advances in each of these fields. Today bioinformatics is a field that encompasses all aspects of the application of computer technologies to biological data. Computers are used to organize, link, analyze and visualize complex sets of biological data. Bioinformatics @ RIT In order to address the need for highly trained individuals in this exciting field, RIT has established new degree programs in Bioinformatics at both the baccalaureate and masters levels. Already a national leader in biotechnology education, we are now offering curricula which lead to the BS and MS degrees in Bioinformatics. The latter is comprised of two tracks of core courses, a choice of electives, and a required research thesis. In addition, we offer a combined BS/MS program which can be completed in a total of five years. An integral component of our program is goal of familiarizing our students with the algorithms and techniques used in and appropriate for bioinformatics. While many of the courses in our programs are already offered, albeit across colleges and departments, we have developed more than 15 new courses for the bioinformatics programs which specifically address the symbiosis between the disciplines within biotechnology and the computing sciences. The interdisciplinary nature of bioinformatics requires close work with departments outside of Biological Sciences. In this light, our programs have been developed in collaboration with the faculty of the departments of Biological Sciences, Computer Science, Information Technology, Mathematics and Statistics and Chemistry.

38. Forensic Bioinformatics DNA Consulting Services Forensic bioinformatics, headed by Dan Krane, reviews cases involving forensic DNA testing. We employ an automated analysis system to provide an objective http://www.bioforensics.com/

Home Introduction Staff Genophiler Overview Deliverables GenoStat Conferences Press Releases DNA in the News Testimonials Prosecution Resources Useful Links DNA Issues Download Articles Presentations Discovery Request 2850 Presidential Dr. Suite 150 Fairborn, OH 45324 Phone: (937) 426-9270 Fax: (937) 426-9271 help@bioforensics.com Forensic Bioinformatics reviews cases involving forensic DNA testing. We employ an automated analysis system to provide an objective review while making the results easy to understand. We provide full consulting and testimony services. We also continue to perform research to better understand and define issues pertaining to forensic DNA testing and interpretation. Our seventh annual conference will be held August 14-17th, 2008. For more information, visit our conference page See Dan Krane, Bill Thompson, Marc Taylor, and others discuss LCN DNA testing on RTE News Prime Time. Click HERE and select the Wayne O'Donoghue story. HERE Find out the importance of utilizing a run-specific RFU threshold HERE . In conjunction, our LOD/LOQ baseline determination beta software has been released. Determine the level of background noise in your samples with our free software. Download it

39. BSP :: Current Bioinformatics Home Page Current bioinformatics aims to publish all the latest and outstanding developments in bioinformatics. Each issue contains a series of timely, http://www.bentham.org/cbio/index.htm

Home News - Browse Titles - New Titles ... - Free E-Updates Access Bentham Online: - Purchase Articles Online - BenthamDirect - Catalogs - Free Online ... Relevant Cconferences Marketing Opportunities: - Advertise with Us Partners - Marketing Exchanges Authors: - Manuscript Submission - Order Reprints and Single Issues - Permission ... Contact Us Current Bioinformatics ISSN: 1574-8936 - Volume 3, 3 Issues, 2008 Current Bioinformatics aims to publish all the latest and outstanding developments in bioinformatics. Each issue contains a series of timely, in-depth reviews written by leaders in the field, covering a wide range of the integration of biology with computer and information science. The journal focuses on reviews on advances in computational molecular/structural biology, encompassing areas such as computing in biomedicine and genomics, computational proteomics and systems biology, and metabolic pathway engineering. Developments in these fields have direct implications on key issues related to health care, medicine, genetic disorders, development of agricultural products, renewable energy, environmental protection, etc.

40. Libertas Academica - Open Access Journals And Text Books Evolutionary bioinformatics is an international, peerreviewed journal focusing on evolutionary bioinformatics. View factor. for journal http://la-press.com/journal.php?pa=description&journal_id=17

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