41. MBB 447b3 (747b3) Syllabus This course will provide an overview of bioinformatics, the application of computational Summer Jobs in bioinformatics. If you re really motivated, http://bioinfo.mbb.yale.edu/mbb447b-99/

Go to New Homepage for Fall 1999 Course Contents of Old Homepage follow below. Spring 1999 BIOINFORMATICS Brief Description Computational analysis of gene sequences and protein structures, on a large-scale. Topics include sequence alignment, biological database design, comparative genomics, geometric analysis of protein structure, and macromolecular simulation. [ Blue Book Entry Timing and Location To be offered in the half of the spring term as a "module." Meeting from 1:00-2:15 PM on Mondays and Wednesday, in Bass 205. (Some classes may also be held on Fridays.) First meeting: Bass 205, 1:00-2:15 PM, Monday 3/22/99. Instructor Mark Gerstein Department, Bass Yale University, New Haven, CT Phone: 203 432-6105, E-mail: Mark.Gerstein@yale.edu kathleen.tatham@yale.edu Class Handouts and Other Documents A synopsis of each of the lectures: http://bioinfo.mbb.yale.edu/mbb447-99/lectures.htm Detailed discussion of course assignments , mailing lists, survey, etc.: http://bioinfo.mbb.yale.edu/mbb447-99/todo.htm If you want to take or audit the course, you need to fill out the survey The course will follow a very similar progression to the bioinformatics course offered last spring (See, in particular

42. Expert: Bioinformatics And Genomics Expert Related Expert Areas for bioinformatics and Genomics Expert 724799. Expert in Genomics, bioinformatics and Molecular Biology. Expert 722071 http://www.intota.com/subject.asp?strTermID=0070321

43. HPCGG Bioinformatics The HPCGG bioinformatics Core recognizes that quantitative analytic methods are now central to the pursuit of biomedical research. http://www.hpcgg.org/Bioinformatics/index.jsp

44. Bioinformatics Zen I work in bioinformatics because I like writing code to solve problems, and my first response is to start coding, rather than look to see if someone has http://www.bioinformaticszen.com/

Bioinformatics Zen bioinformatics_pattern = ['fetch data', 'analyse data','plot result'] Passive research streaming using Twitter, Flickr, and CiteULike March 18th, 2008 Deepak Neil , and Cameron Subversion to back up my project files, and I noticed Twitter status updates are very similar in length to subversion log messages. I created a short script so that every time I do a subversion repository check in, the message is also sent to Twitter. #!/bin/sh #Inspired by tinyurl.com/yt4ssq # Scrub weird characters MSG= echo # Send twitter request curl basic user "username:password" data-ascii "status=$MSG" "http://twitter.com/statuses/update.json" # Send SVN request svn ci -m $MSG Combined with an RSS Wordpress plugin, my most recent research activity from Twitter is displayed as a stream on my blog. Taking this a step further I included feeds for my research tagged Figures on Flickr, my paper bibliography on CiteULike, and discussion of my research on my blog. This stream is available on www.michaelbarton.me.uk/research-stream/ Posted in communication research Tagged blogging citeulike flickr life stream ... web 2.0

45. Bioinformatics Solutions Inc. (PEAKS De Novo & PID, RAPTOR & PatternHunter) Professional algorithmic and software solutions for the bioinformatics industry PROSPECT for protein structure prediction, PatternHunter for identifying http://www.bioinformaticssolutions.com/

News Products Downloads Support ... Corporate FEATURE PRODUCT: PEAKS (Peptide Mass Spectrometry) De novo sequencing requires the finest tuned algorithms to accurately identify unknown proteins. Without question, PEAKS has proven itself against other de novo sequencing software designed for mass spectrometry. To compound on its superior de novo sequencing capabilites, PEAKS offers "inChorus", a protein identification tool that allows users to run multiple protein search engines simultaneously. User Reviews de novo sequencing News The relevance and need for de novo sequencing far exceeds one's initial expectations. Eliminate the guessing by removing fasle positives and reaffirming false negatives too. 2 Best Paper Awards MS/MS Server/Cluster Solution: PEAKS Online 2.0 Release PEAKS Studio 4.5 (release) more Conferences NGS San Diego April 23-24 ASMS Denver June 1-5 Site Map

46. Molecular Biology Protocols | Bioinformatics A molecular biology portal for molecular protocols and methods, listings for bioinformatic tools and product information, the latest news and views on http://www.molecularstation.com/

Bioinformatics, Protocols, DNA RNA Protein Proteomics Sponsor / Advertise Link to us Contact us About us ... Related Biology Links Send this page to a friend Intracellular Stations Antibody Botany Common Buffers Buffers Alphabetic ... Western Blot Welcome to Molecular Station! You have to register before you can post on our forums or use our advanced features. Register Now! Its Free and Fast! Already registered? Login now below. User Name: Password: Remember Me? Already registered and Forgot your password? Click below to recover it. Recover Lost Password Join now - it's fast and free! Molecular Station is THE largest network of researchers, scientists and science lovers anywhere! Molecular Biology - Science Quotes There is no prescribed route to follow to arrive at a new idea. You have to make the intuitive leap. But the difference is that once you've made the intuitive leap you have to justify it by filling in the intermediate steps. In my case, it often happens that I have an idea, but then I try to fill in the intermediate steps and find that they don't work, so I have to give it up. ~Stephen W. Hawking Molecular Biology Newsletter!

47. SCPD - Programs - BioMedical Informatics Required Courses. BIOMEDIN214 Representations and Algorithms in Computational Biology. Electives. BIOMEDIN217 Translational bioinformatics (Bio Focus) http://scpd.stanford.edu/scpd/programs/certs/bioinformatics.htm

Jump To... Home Online Classroom Deadlines Academic Sched. All Offerings by Subject ProEd Sched. Faculty/TA Guidelines. Forms Site Index In 1923, Virginia Austin became the first woman to receive a degree in engineering from Stanford. Sponsoring Academic Department: Biomedical Informatics Develops an understanding of techniques for analyzing the vast amount of biological data from recent genomic research to explore new applications. Emphasizes molecular biology in addressing topics ranging from sequence, structure and function analysis to the context of algorithms, databases and visualization. Download certificate brochure in portable document format (pdf). Those interested in obtaining the Certificate must take BIOMEDIN214, one course from the Biology focus and one course from the Computer Science focus. In addition, they must obtain a grade of B or better in each course. Required Courses : Representations and Algorithms in Computational Biology Electives : Translational Bioinformatics (Bio Focus) : Biomedical Genomics (Biology focus) : Computational Structural Biology: Protein Simulation, Function and Prediction (Biology focus)

48. CoE Bioinformatics - Buffalo bioinformatics research center with over 100 scientists with biological, physical and computational expertise engaged in interdisciplinary research. http://www.bioinformatics.buffalo.edu/

Leadership Research Institutions Community Events ... Watch and listen to a video highlighting the center, its efforts, and its impact. was created in Buffalo, New York in 2002 as part of more than $200 million dollars in investment from state, federal, industry and philanthropic sources to create a hub of life sciences expertise and innovation in Upstate New York. The COE brings a strong foundation in life sciences research and discovery to its mission and collaborative efforts with industry, government and researchers around the world to improve the health and well-being of the population. COE research institutions have been around for more than 100 years with the University at Buffalo (UB) as the lead academic organization, and Roswell Park Cancer Institute and Hauptman-Woodward Medical Research Institute as research partners. The rich history of discovery among scientists at CoE research institutions include: BAC Libraries for Sequencing the Human Genome Platinum Coil for Inoperable cranial Aneurysms Prostate-Specific Antigen (PSA) Test Surfactant Replacement Therapy for Neonatal Respiratory Distress Photodynamic Therapy for Cancer Beta-Interferon Therapy for Multiple Sclerosis Nicotine Replacement Therapy Sickle Cell Screening Test High-Throughput Crystallization Method Timed-Release Insulin Therapy The COE and its research partners are completing the process of moving into 400,000 square feet of state-of-the-art research facilities in three new interconnected buildings, known as the

49. Bioinformatics At The NIH Welcome to the NIH bioinformatics Web Site Your Source of Information about Biomedical Computing at the National Institutes of Health http://www.bisti.nih.gov/

Text Only Hide Menu BISTI Home BISTIC Funding Charter ... Members Only Bioinformatics at the NIH Welcome to the NIH Bioinformatics Web Site - Your Source of Information about Biomedical Computing at the National Institutes of Health This Web Site - The Web site contains information on the BISTI Consortium , bioinformatics News and Events , a Calendar of related events, biomedical computing Symposia Funding Opportunities in bioinformatics, and General Information about the field. What is Bioinformatics? - Research, development, or application of computational tools and approaches for expanding the use of biological, medical, behavioral or health data, including those to acquire, store, organize, archive, analyze, or visualize such data. What is Computational Biology? - The development and application of data-analytical and theoretical methods, mathematical modeling and computational simulation techniques to the study of biological, behavioral, and social systems. ( Working Definition of Bioinformatics and Computational Biology - July 17, 2000

50. Eastern Michigan Bioinformatics bioinformatics at Eastern Michigan is an exciting new interdisciplinary program that involves faculty from the departments of Biology, Chemistry, http://www.emich.edu/bioinformatics/

Eastern Bioinformatics Developing professional science skills Home Faculty Programs Applicant Resources ... Bioinformatics Partners EMU Sites EMU Home About EMU Future Students Students Athletics Contact EMU Search EMU Eastern Michigan University Ypsilanti, MI, USA 48197 University Information: 734.487.1849 Welcome to EMU Bioinformatics! Bioinformatics at Eastern Michigan is an exciting new interdisciplinary program that involves faculty from the departments of Biology, Chemistry, Computer Science and Mathematics in the College of Arts and Sciences, and the department of Management in the College of Business. The program was formally approved in March of 2004, and began its first official semester with just under 20 students. Our students come from backgrounds as broad as those of the faculty teaching in the program, which makes for a rich learning environment for all. Whether you are visiting as a prospective or current student, a prospective or current partner, or are just curious, welcome! If you cannot find what you are looking for please feel free to email bioinformatics@emich.edu

51. Bioinformatics This is a bioinformatics site created by undergrads primarily for undergrads. It has instructions and links for bioinformatic tools and resources. http://www.colorado.edu/chemistry/bioinfo/

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52. Professional Science Master's Programs: Bioinformatics bioinformatics has important applications in such areas as drug design, genetic disease testing, and agricultural biotechnology. Industries active in these http://www.cosm.sc.edu/professional/cosm0.html

Bioinformatics In the past two decades, improvements in the techniques of molecular biology have created extensive databases of information on the sequence, structures, and functions of biological macromolecules (especially DNA and proteins). This accumulation of information has culminated in genomic sequencing projects, which have provided complete genomic sequences of a wide variety of organisms, including many micro-organisms that are human disease agents, and finally the complete human genome. New techniques, such as gene expression microarrays and techniques for the study of protein expression, have provided additional information that will aid in unraveling cellular function at the molecular level. The use of computational methods to mine the biological information in genomic sequences and in data on molecular structure and expression constitutes the core of the new and rapidly growing field of bioinformatics. Bioinformatics has important applications in such areas as drug design, genetic disease testing, and agricultural biotechnology. Industries active in these and related areas have a growing need for intensive application of computational methods by professionals possessing training in both molecular biology and computer science and understanding the computational and statistical methods specific to biological sequence analysis. There is already a high demand for professionals having the combination of skills required for work in this area, a demand that is likely to continue at a high level for the foreseeable future.

53. PCBI: Penn Center For Bioinformatics Our interdisciplinary center focuses on research and education in the rapidly emerging fields of bioinformatics and computational biology, disciplines which http://www.pcbi.upenn.edu/

CONTACT INFORMATION Mission News and Highlights PGI ... Bioinformatics Alliance Quick Links School of Medicine School of Engineering U. Penn home Welcome to the Penn Center for Bioinformatics Our interdisciplinary center focuses on research and education in the rapidly emerging fields of bioinformatics and computational biology, disciplines which deal with the analysis and management of data generated by high-throughput techniques in genomics, molecular and cellular biology. The ultimate goal of our collaborative research is to integrate all levels of information, including the genome sequence, the state of the cell (e.g., transcriptome and the proteome) and the phenotype. PCBI brings together faculty from several schools - from biologists to computer scientists and mathematicians. We provide a home for the newly formed graduate group in Genomics and Computational Biology . Finally, for the broader Penn community, PCBI provides bioinformatics services and tools, through the Penn Bioinformatics Core Maja Bucan, Interim Director, Department of Genetics Lyle Ungar, Associate Director

54. Welcome To The Homepage Of The Bioinformatics Center At Rensselaer And Wadsworth The bioinformatics Center at Rensselaer and Wadsworth focuses its work on collaboration and training in a rapidly developing new field of biological science http://www.bioinfo.rpi.edu/

The Bioinformatics Center at Rensselaer and Wadsworth Welcome to BiC Home Applications Research Education ... About Us The Bioinformatics Center at Rensselaer and Wadsworth focuses its work on collaboration and training in a rapidly developing new field of biological science - Bioinformatics. It unites the world renowned specialists in the field of bioinformatics and facilitates joint research, recruitment of scientists, and education of future Bioinformatics specialists. What is Bioinformatics? Bioinformatics in the Rensselaer Plan Useful links We offer bioinformatics software applications to the international scientific community, showcase research done by our members and present the latest information on Bioinformatics courses and educational programs offered by RPI. What is Bioinformatics Although everyone agrees that Bioinformatics is undergoing explosive growth, not everyone agrees on the uniform definition of this discipline. Below we present several definitions and reference links discussing bioinformatics. National Center for Biotechnology information Comments Bioinformatics is the field of science in which biology, computer science, and information technology merge into a single discipline. The ultimate goal of the field is to enable the discovery of new biological insights as well as to create a global perspective from which unifying principles in biology can be discerned.

55. Oxford Journals | Life Sciences | Bioinformatics | Information For Authors bioinformatics About This Journal Contact This Journal Subscriptions Current Issue Archive Search Oxford Journals Life Sciences http://www.oxfordjournals.org/bioinformatics/for_authors/index.html

@import "/resource/css/main.css"; @import "/resource/css/general_page.css"; @import "/resource/css/journal.css"; @import "/resource/css/bioinformatics.css"; @import "/resource/css/progress.css"; Skip Navigation Oxford Journals Contact Us My Basket ... For Authors Information for Authors Information for Authors Instructions to authors Scope Guidelines Forms for accepted manuscripts only: Conflict of Interest Form The Journal About this journal Calendar of events Dispatch date of the next issue This journal is a member of the Committee on Publication Ethics (COPE) Impact factor: 4.894 Editors-in-Chief A Bateman A Valencia View full editorial board For Authors Instructions to authors Online submission Submit Now! Self-archiving policy Open access options for authors - visit Oxford Open Alerting Services Email table of contents Email Advance Access CiteTrack XML RSS feed Corporate Services Advertising sales Reprints Supplements Online ISSN 1460-2059 - Print ISSN 1367-4803 2008 Oxford University Press Oxford Journals Oxford University Press Site Map Frequently Asked Questions Other Oxford University Press sites: Oxford University Press Oxford Journals Japan American National Biography Booksellers' Information Service Children's Fiction and Poetry Children's Reference Dictionaries Dictionary of National Biography Digital Reference English Language Teaching Higher Education Textbooks Humanities International Education Unit Law Medicine Music Online Products Oxford English Dictionary Reference Rights and Permissions

56. Journal Of Bioinformatics And Computational Biology (JBCB) www.worldscinet.com/jbcb/jbcb.shtml http://www.worldscinet.com/jbcb/jbcb.shtml

News New Journals Browse Journals Search ... JBCB Journal of Bioinformatics and Computational Biology (JBCB) The Journal of Bioinformatics and Computational Biology aims to publish high quality, original research articles, expository tutorial papers and review papers as well as short, critical comments on technical issues associated with the analysis of cellular information. More News World Scientific is proud to announce the launch of a new online submission system, Editorial Manager (EM), for Journal of Bioinformatics and Computational Biology . One of the industry standard systems used by major academic publishers, EM provides a full online solution for manuscript submission, peer-review, and tracking. Authors can submit their LaTeX or MS-Word manuscript source files at the submission stage and check review progress from their web accounts Referees can submit reports easily through the easy-to-use web interface and have access to their assignments online anytime Editors can manage and monitor submissions, send reminders to referees and keep up-to-date via automatic email alerts Feature Articles (Free Online Sample Issue) Vol. 5, No. 5 (October 2007)

57. Laboratory For Interdisciplinary Technologies In Bioinformatics Our aim is to develop a Laboratory for Interdisciplinary Technologies in bioinformatics (LITBIO) applied to Genomics, Transcriptomics, Proteomics and http://www.litbio.org/

LITBIO ( Laboratorio Interdisciplinare di Tecnologie Bioinformatiche ) Laboratory for Interdisciplinary Technologies in Bioinformatics Main News LITBIO Resources ... LITBIO Our aim Molecular medicine has progressed to the point where the majority of human genes and proteins have been characterized and computational methods are necessary for further understanding of structure, mechanism and function. Our aim is to develop a Laboratory for Interdisciplinary Technologies in Bioinformatics (LITBIO) applied to Genomics, Transcriptomics, Proteomics and Metabolomics. This infrastructure will be capable of providing international research and development programs with the new analysis strategies of biomedical and biotechnological data. The aim of the project is to establish cooperation between private and public organizations and to stimulate the growth of new enterprises in the sector of Bioinformatics. This platform will help the interdisciplinary development of new job opportunities in bioinformatics, biotechnology and medicine. search Main News LITBIO Resources ... PORTAL LITBIO Partners CILEA CNR/IEIIT Universita' degli Studi di CAMERINO Universita' degli Studi di GENOVA ... Eurotech S.p.A.

58. Bioinformatics Protocols Comprehensive guide to almost every aspects of bioinformatics such as database searching, algorithms, sequence analysis, protein structure and more. http://www.protocol-online.org/prot/Bioinformatics/

59. Biobrew Bioinformatics Packages BioBrew is a collection of opensource applications for life scientists and an in-house project at bioinformatics.Org. The BioBrew Roll for Rocks can be http://biobrew.bioinformatics.org/

A BioBrew Roll for Rocks 4.1 is currently available. Create a Rocks cluster ( www.rocksclusters.org ) for bioinformatics! BioBrew is a collection of open-source applications for life scientists and an in-house project at Bioinformatics.Org. The BioBrew Roll for Rocks can be used to create Rocks/BioBrew Linux, a distribution customized for both cluster and bioinformatics computing: it automates cluster installation, includes all the HPC software a cluster enthusiast needs, and contains popular bioinformatics applications. Used in many cluster systems today! To the right, a Rocks/BioBrew cluster running at the Supercomputing Conference, November 2003. Built by Glen Otero, the cluster shown was part of a larger system containing 192 nodes. Each node contained dual Xeons and used Infiniband. It clocked in at over 1 TFLOPS (one Trillion Floating-Point Operations Per Second) of performance, which would have made it one of the 500 fastest computers in the world (though not listed on top500.org). The ticket price for the cluster was USD 1 million. This part of the cluster was touring the world and was seen at expos in Arizona, California, China and Spain. BioBrew is "FREE AS IN BEER"!

60. Bioinformatics Resources At OSC OSC offers bioinformatics software, enabling technologies, and application database resources to Ohio s higher education community. http://www.osc.edu/research/bioinformatics/

@import url("/navbar.css"); At A Glance People and Committees Resources Careers ... Research Archive Related Links AT Summit Collaborations Get an Account Research Partners ... Research Video Library Bioinformatics Resources Challenges in state-of-the-art biology research are being met daily by using high-performance computing technologies. The research need to integrate, search, analyze, organize, compare and share increasing volumes of diverse information is at the heart of the challenge. Working collaboratively with research teams from multiple disciplines, including botany, microbe, animal, and human, researchers at OSC combine advanced computing technologies with research challenges to break barriers to critical insight. The focus of the group is to exploit the most advanced computing technology to accelerate comparative informatics and advance modeling for systems biology. With a special emphasis on parallel computing technologies, the Computational Biology and Bioinformatics Technology Research Group (CBBTRG) integrates individuals with expertise in computer science, software development, microbiology, computational chemistry, and project management to deliver solid solutions for researchers across Ohio and nationally. Past Projects Large-scale Systems Biology Research at OSC Ohio BioRepository OpenFPGA SAGESpy Application Development ... Expression Profile of Genes Involved in Angiopoietin 2-induced Astrocytoma Invasion Presentations and Publications Publications, Presentations and Posters

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