61. PhD In Computational Biology Bioinformatics - Duke University The PhD Program in Computational Biology bioinformatics (CBB) is an integrative, multidisciplinary training program that encompasses the study of biology http://www.cbcb.duke.edu/

62. Archive Of "BMC Bioinformatics". Articles from BMC bioinformatics are provided here courtesy of BioMed Central. Write to PMC PMC Home PubMed NCBI U.S. National Library of Medicine http://www.pubmedcentral.nih.gov/tocrender.fcgi?journal=13&action=archive

63. IBM Bioinformatics And Pattern Discovery Group / TEIRESIAS: Sequence Pattern Dis Several genomics and proteomics tools, including multiple alignments, gene expression analysis, tandem repeat and motif discovery. http://cbcsrv.watson.ibm.com/Tspd.html

This site works best with Javascript "enabled" browsers, but your browser has Javascript "disabled". All searches using this tool will be performed on an IBM Computational Biology Center server. document.write(''); sideMenu(localAdminEmailHtml); Options Parameters Equivalency Sets (type or paste) SELECT A SET TO USE Chemical nature of AA Structural character of AA Discovery Using Equivalences Exact Discovery Max Brackets: L: W: K: Q: Case sensitive! Seq Version Remove Overlaps Upper Case Only amino acid characters Only nucleic acid characters Accept all characters Input Sequences (type or paste) SELECT A SAMPLE Toy data set Hemoglobin set Zurich FTP set References: Rigoutsos, I. and A. Floratos, Combinatorial Pattern Discovery in Biological Sequences: the TEIRESIAS Algorithm. Bioinformatics, 14(1), January 1998. Rigoutsos, I. and A. Floratos. Motif Discovery Without Alignment Or Enumeration. Proceedings 2nd Annual ACM International Conference on Computational Molecular Biology (RECOMB '98), New York, NY. March 1998.

64. The Genomics And Bioinformatics Group Publications, tools and dataset by the genomics and bioinformatics group. http://discover.nci.nih.gov/

Home Publications Tools Data Sets ... Search A Perspective article in the March 28, 2008 issue of Science ( A Postgenomic Visual Icon ) on clustered heat maps and visualization of massive data sets in postgenomic biology ( Weinstein, JN., 2008 ). Also see our original article in Science on clustered heat maps and "pre-postgenomic" biology ( Weinstein, et al., 1997 Updated version of CIMminer, a tool for creating clustered heat maps. The LeFE algorithm: embracing the complexity of gene expression in the interpretation of microarray data. Eichler, et al. CellMiner : A database and query tool coordinated with the SMP series to facilitate integration and fusion of the various molecular datasets generated by the GBG and its many collaborators. Designed for the cancer research community, the goal is to provide a platform for both system wide elucidation of molecular systems and aid in pharmacogenomic research. Available bioinformatic resources from the GBG (The Miner Suite) include: CIMminer : Produces Clustered Image Maps (CIMs) (i.e., clustered heat maps).

65. Poxvirus Bioinformatics Resource Center The Poxvirus bioinformatics Resource Center has been established to provide resources to the scientific community for basic research and to facilitate the http://www.poxvirus.org/

You are viewing a version of the PBR website that has limited functionality. To view the current version, please enable Javascript in your browser, close the browser, and reopen it. For assistance, please contact the PBR Administrator Welcome to the PBR Study additional viruses at the Viral Bioinformatics Resource Center Welcome to the Poxvirus Bioinformatics Resource Center. This Center has been established to provide specialized web-based resources to the scientific community having an interest in studying poxviruses. Goals for the site include facilitation of basic research as well as the development of novel antiviral therapies, vaccines against human orthopoxvirus infections, new approaches for the environmental detection of virions, and methods to accomplish more rapid diagnosis of disease. The Poxvirus Bioinformatics Resource Center was created by a consortium of laboratories, and its development is guided by an Advisory Committee. Funding for this project is provided by the National Institute for Allergy and Infectious Diseases , and the Defense Advanced Research Projects Agency Current Statistics Version 6.4 (14 Jan 2008)

66. UCSD Bioinformatics And Systems Biology Group bioinformatics and Systems Biology. university of california. Research Projects People Publications Jobs Home. Website designed and developed by http://genome.ucsd.edu/

Bioinformatics and Systems Biology Research Projects People Publications ... Home Website designed and developed by Dawn Cotter Currently maintained by Shannon Prior Last modified: Monday, 11-Feb-2008 16:14:27 PST06/2007 Site Map

67. UC Berkeley Extension -- Bioinformatics UC Berkeley Extension bioinformatics. http://www.unex.berkeley.edu/prog/bioinformatics/

68. NCICB: Home National Cancer Institute Center for bioinformatics The NCI Center for bioinformatics (NCICB) helps speed scientific discovery and facilitates http://ncicb.nci.nih.gov/

Search: Site Map RELATED LINKS NCICB Events Publications Staff Directory Driving Directions DOWNLOADS [ more... As you progress through the site, check here for links to Downloads that are associated with the contents of the page you are reading. GLOBAL QUICK LINKS caCORE 3.2 Info and Documentation caGrid now available cancer Biomedical Informatics Grid™ (caBIG™) Open Development Initiative Mini-guide to this web site caCORE FTP site NCICB GForge Portal HOME ABOUT NCICB INFRASTRUCTURE TOOLS ... SUPPORT Welcome to the NCI Center for Bioinformatics NCI-CBIIT Career Announcement: Position of Principal Deputy Learn More About This Site Click here to visit the site mini-guide. The NCI Center for Bioinformatics (NCICB) helps speed scientific discovery and facilitates translational research by building many types of tools and resources that enable information to be shared along the continuum from the scientific bench to the clinical bedside and back. NCICB offers critical open-source infrastructure components that others can use to develop valuable databases and software tools to meet specific research needs. NCICB's expanding suite of tools is built from these foundational components. Our projects bring tools and partners together to tackle key challenges. Powerful resources available on the NCICB site: Infrastructure Build research information systems with open-source software development kit Tools Review tools and services built to facilitate your clinical and lab research activities ... Learn about our mission, team, initiatives and events

69. EURASIP Journal On Bioinformatics And Systems Biology — An Open Access Jou The overall aim of EURASIP Journal on bioinformatics and Systems Biology is to publish research results related to signal processing and bioinformatics http://www.hindawi.com/journals/bsb/

Advanced Search Hindawi Publishing Corporation Home Journals About Us About this Journal ... Table of Contents Journal Menu Abstracting and Indexing Aims and Scope Article Processing Charges Author Guidelines ... in Editorship About this Journal The overall aim of EURASIP Journal on Bioinformatics and Systems Biology is to publish research results related to signal processing and bioinformatics theories and techniques relevant to a wide area of applications into the core new disciplines of genomics, proteomics, and systems biology.The journal is intended to offer a common platform for scientists from several areas including signal processing, bioinformatics, statistics, biology and medicine, who are interested in the development of algorithmic, mathematical, statistical, modeling, simulation, data mining, and computational techniques, as demanded by various applications in genomics, proteomics, system biology, and more general in health and medicine.

70. IEEE/ACM Transactions On Computational Biology And Bioinformatics Recent content for Transactions on Computational Biology and bioinformatics. Editorial—Associate Editor Appreciation and Welcome. Dan Gusfield http://www.computer.org/tcbb/

71. An SVM And ANN Based HLA-DR Bininding Peptide Prediction Method Coordinator, bioinformatics Centre Institute of Microbial Technology Sector 39A, Chandigarh, India Phone +91172-690557 +91-172-690908 http://bioinformatics.uams.edu/mirror/hladr4pred/

The HLA-DR4Pred is an SVM and ANN based HLA-DRB1*0401(MHC class II alleles) binding peptides prediction method. The accuracy of the SVM and ANN based methods is ~86% and ~78% respectively.The performence of the methods was tested through 5 set cross-validation. The training of SVM and ANN was done by using the freely availaible SVM_LIGHT and SNNS packages respectively. The data for training of neural network and SVM model has been extracted from MHCBN database.This method will be useful in cellular immunology, Vaccine design, immunodiagnostics, immunotherapeuatics and molecular understanding of autoimmune susceptibility. Home Instructions Information References ... Specify Sequence Format Amino acids in single letter code (plain text) Standard sequence format (PIR/FASTA/EMBL etc.) Prediction Based on SVM Threshold ANN Threshold Tabular Display Display Top Peptides Dr. G P S Raghava Coordinator, Bioinformatics Centre Institute of Microbial Technology Sector 39A, Chandigarh, India Phone: +91-172-690557 +91-172-690908 Fax: +91-172-690585 +91-172-690632 Email: raghava@imtech.res.in

72. Symposium On Applied Computing Expanded version of 45 top ranking papers will be accepted for publication in the International Journal of Data Mining and bioinformatics http://www.cs.iupui.edu/~bioin/

Bioinformatics Track Important Dates Track Topics Chairs The ACM Symposium on Applied Computing (SAC) is a primary forum for applied computer scientists and application developers from around the world to interact and present their work. SAC 2008 is sponsored by the ACM Special Interest Group on Applied Computing (SIGAPP) and is presented in cooperation with other ACM Special Interest Groups. For more information on ACM SAC 2008, please visit: http://www.acm.org/conferences/sac/sac2008/ Bioinformatics Track The publishing of the draft of the human genome marked a major step in the advancement of understanding how the human body works at a molecular level by giving biologists the potential genes from which all proteins and molecular interactions can be derived. In parallel, very high throughput experimental techniques in molecular biology and new high resolution biomedical imaging techniques have provided a wealth of data to be analyzed and understood. The genome sequence and these high end technologies have ushered in an era of exponential growth of data related to how organisms function. DOE's Genomes to Life program for example, will make important contributions in the quest to venture beyond characterizing such individual life components as genes and other DNA sequences toward a more comprehensive, integrated view of biology at a whole-systems level. This track will address research issues related to these challenges. A large part of the information to support biological and biomedical research is available from large heterogeneous databases in a wide variety of formats. The challenge is to obtain information and knowledge from these databases using innovative computational approaches to support and promote biological and biomedical research. One example of such a computational challenge is in identifying biological pathways using data, information, and knowledge scattered over heterogeneous databases. Computational tools using system-theoretic approaches are needed to model metabolic pathways, signal-transduction pathways, genetic regulatory circuits and biological systems.

73. HSLS: OBRC: Online Bioinformatics Resources Collection The Online bioinformatics Resources Collection (OBRC) contains annotations and links for 1783 bioinformatics databases and software tools. http://www.hsls.pitt.edu/guides/genetics/obrc

About HSLS Contact Us Remote Access Health Sciences Library System ... Molecular Biology OBRC: Online Bioinformatics Resources Collection OBRC Email Suggestions Recommend a New Resource The Online Bioinformatics Resources Collection (OBRC) contains annotations and links for 1783 bioinformatics databases and software tools. Search examples: transcription factors promoters RNAi Powered by Browse: DNA Sequence Databases and Analysis Tools Enzymes and Pathways Gene Mutations, Genetic Variations and Diseases Genomics Databases and Analysis Tools ... Structure Databases and Analysis Tools The Health Sciences Library System supports the Health Sciences at the University of Pittsburgh and the Contact the Webmaster University of Pittsburgh Libraries

74. Bioinformatics B.S. - Bioinformatics - Programs - Jack Baskin School Of Engineer The Department of Biomolecular Engineering offers B.S., M.S., and Ph.D. degrees in bioinformatics. Students majoring in another, related subject may minor http://www.cse.ucsc.edu/programs/bioinformatics/undergraduate/

Bioinformatics 2007-08 Class Schedule Undergraduate Introduction ... 2003-04 Curriculum Research: Bioinformatics Research Research Programs News/Events ... Administration Bioinformatics B.S. Degree Program Program Description The Department of Biomolecular Engineering offers B.S., M.S., and Ph.D. degrees in bioinformatics. Students majoring in another, related subject may minor in bioinformatics . Also, bioinformatics students may apply in their senior year for our combined B.S./graduate program , which streamlines the path to the advanced degree. Bioinformatics combines mathematics, science, and engineering to explore and understand biological data from high-throughput experiments, such as genome sequencing and gene expression chips. The program builds on the research and academic strengths of the faculty in the . One notable output from our research is that UCSC is the primary release site for the public version of the human genome: http://genome.ucsc.edu . We are also a major player in protein-structure prediction: protein-prediction servers The immense growth of biological information stored in computerized databases has led to a critical need for people who can understand the languages, tools, and techniques of mathematics, science, and engineering. A classically trained scientist may be unfamiliar with the statistical and algorithmic knowledge required in this field. A classically trained engineer may be unfamiliar with the chemistry and biology required in the field. This program strives for a balance of the two: an engineer focused on the problems of the underlying science, or, conversely, a scientist focused on the use of engineering tools for analysis and discovery.

75. Welcome An Introduction to bioinformatics Algorithms We feel that the materials that are used in different bioinformatics courses at different institutions are http://www.bioalgorithms.info/

var sc_project=392754; var sc_partition=1; bioalgorithms.info For Students For Instructors Contact Us ... Classes An Introduction to Bioinformatics Algorithms From Amazon.com From MIT Press Professors: order an evaluation copy Introduction Table of Contents by content area ... Sample Chapter (Dynamic Programming Algorithms) Featuring biosketches sample This introductory text offers a clear exposition of the algorithmic principles driving advances in bioinformatics. Accessible to students in both biology and computer science, it strikes a unique balance between rigorous mathematics and practical techniques, emphasizing the ideas underlying algorithms rather than offering a collection of apparently unrelated problems. The book introduces biological and algorithmic ideas together, linking issues in computer science to biology and thus capturing the interest of students in both subjects. It demonstrates that relatively few design techniques can be used to solve a large number of practical problems in biology, and presents this material intuitively. SITE NEWS Extended outtage The colocated server that hosted this site died, but it has now moved to its new home at UCSD. Hopefully that will be somewhat more stable. During the move, the discussion boards were broken. In my opinion, this is not a bad thing and I probably won't ever revive them in their old format, though I will post the final errata list. Considering that we had over 40,000 users but about 50 posts mostly spambots were signing up for accounts so that they could unsuccessfully try to hawk their golf clubs and lingerie it seems like more of a haven for abuse than for anything remotely productive. I'll start up a google group for this instead.

76. Snowdeal.org > {bio,medical}informatics The University of Illinois at Chicago (UIC) is currently the only learning institution in the state that possesses an accredited bioinformatics program. http://snowdeal.org/section/informatics/

@import url("http://www.blogger.com/css/blog_controls.css"); @import url("http://www.blogger.com/dyn-css/authorization.css?blogID=46567"); @import "http://snowdeal.org/styles/global2.css"; conflux ex machina parallax photographs ... Wednesday, June 21, 2006 bookmark: connotea del.icio.us digg furl ... (0) comments ePrairie University of Illinois at Chicago Bioinformatics Program a 'Well-Kept Secret' "The University of Illinois at Chicago (UIC) is currently the only learning institution in the state that possesses an accredited bioinformatics program. UIC offers 12 credits in bioinformatics through a program called BiTmaP. "It's a well-kept secret this program because the tuition is free," BiTmaP program director Ann Reed told ePrairie. BiTmaP is a free training program sponsored by the U.S. Department of Labor through a $3 million grant awarded to the Chicago Technology Park. The program was created with the intent to bridge the growing gap between unemployed or underemployed IT professionals and the booming life sciences community." Monday, June 19, 2006

77. IGB :: Institute For Genomics And Bioinformatics Specializing in making publicly available software and database services for computational biology. http://www.igb.uci.edu/

Please enable javascript on your browser. News Special Events Assistant Project Scientist Position IGB and CODA Genomics collaborate to re-engineer yeast for biofuel production Graduate students win prestigious data mining competition IGB's BIT Program Awarded $5.6 Million Grant ... Upcoming in the Distinguished Speaker Series: David Heckerman (Microsoft) - Oct. 29, 2007 Klaus Schulten (UIUC) - Nov. 9, 2007 Tommi Jakkola (MIT) - Nov. 16, 2007 Alan Perelson (Los Alamos) - Nov. 29, 2007 Tom Griffiths (UCB) - Jan. 17, 2008 Dan Gusfield (UC Davis) - Feb. 7, 2008 Andrew McCallum (UMass) - Feb. 21, 2008 Trevor Hastie (Stanford) - Mar. 20, 2008 Prabhakar Raghavan (Yahoo!)- Apr. 17, 2008 Paul Rothemund (Caltech) - May 30, 2008 IGB to Sponsor Caltech's Center for Advanced Computing Research (CACR) Workshop on Interdisciplinary Strategic Issues in e-Science and Cyber-Infrastructure June 12-14, 2007 ICSB 2007 October 1-6, 2007 Long Beach Convention Center (more info to follow)

78. Computational Biology Or Bioinformatics References A complaint about the sloppy use of the term homology in the biology and bioinformatics literature. Some good points, but neglects the problem that http://www.soe.ucsc.edu/~karplus/compbio_pages.html

Computational Biology or Bioinformatics references Resources needed for protein-prediction contest: PDB WWW Server Home page for the official repository of publicly released 3D structures (mostly protein, some nucleic acid). STRUCTURE Abstract:Bryant Cytokines Web The NCGR Microbial Genome Site: Pyrobaculum aerophilum IBCP WWW server form The BioInformer EBI's bioinformatics newsletter ... CINEMA This web site contains applets for v2.02, and the new v2.1 of the Color INteractive Editor for Multiple Alignments. Provides a client java applet to assist visualization of alignments among different sequences. It is capable of loading sequences/alignments from a database, shifting of sections, and loading/saving of the resulting alignment files Obsolete pointer to earlier version of CINEMA Sisyphus and protein structure prediction Bayesian Formulation of X-Ray Crystallography Links for multiple alignment ... Misha Gelfand's home page A very long, text-only bibliography (functional analysis of nucleotide sequences reference list) is available under his home page. MAGPIE GENOME SEQUENCING PROJECT LIST Computers dive into gene pool A San Jose Mercury News article about the wonders of bioinformatics.

79. Bioinformatics In 2001, the bioinformatics Graduate Program was created by joining the disciplinary strengths found in the departments of Mathematics, Statistics, http://gp.bbc.mcw.edu/

Master of Science in Bioinformatics Offered jointly by Marquette University and the Medical College of Wisconsin Home Program Description Admissions Courses ... Site Map Years of research into new applications of mathematics, computer science, and engineering in the biomedical disciplines coupled with today's massive amounts of data and information, demonstrates the need to train practitioners and scientists in the interdisciplinary field of bioinformatics In 2001, the Bioinformatics Graduate Program was created by joining the disciplinary strengths found in the departments of Mathematics, Statistics, Computer Science, Bio, and Electrical Engineering at Marquette University in conjunction with the bioinformatics and biomedical research conducted at the Medical College of Wisconsin . This program offers a joint Master of Science degree from both Marquette University and the Medical College of Wisconsin. The joint M.S. degree is aimed primarily at prospective and career-changing students whose undergraduate and graduate education prepares them for a multi-disciplinary career in biomedical science using informatics. By scheduling many of the graduate level courses in the evening, the program allows for part-time graduate studies for students already active in full-time employment. The program is also suitable for more traditional, full-time graduate students. Graduates of the program have been successful in finding positions as bioinformatics specialist, computational biologist, computer programmer, senior research associate, and database specialist.

80. Website Is Down For Maintenance This website is temporarily down for Maintenance. It will be back up as soon as possible. http://www.bis.med.jhmi.edu/

This website is temporarily down for Maintenance. It will be back up as soon as possible

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